poppr (version 1.1.1)

[,genclone,ANY,ANY,ANY-method: Methods used for the genclone object

Description

Default methods for subsetting genclone objects.

Usage

## S3 method for class 'genclone,ANY,ANY,ANY':
[(x, i, j, ..., loc = NULL,
  treatOther = TRUE, quiet = TRUE, drop = FALSE)
## S3 method for class 'genclone':
initialize(.Object, gen, hierarchy, mlg)
## S3 method for class 'genclone':
show(object)
## S3 method for class 'genclone':
print(x, ...)

Arguments

x

a genclone object

i

vector of numerics indicating number of individuals desired

j

a vector of numerics corresponding to the loci desired.

...

passed on to the genind object.

drop

set to FALSE

loc

passed on to genind object.

treatOther

passed on to genind object.

quiet

passed on to genind object.

.Object

a character, "genclone"

gen

"genind" object

hierarchy

a data frame where each row i represents the different population assignments of individual i in the data set. If this is empty, the hierarchy will be created from the population factor.

mlg

a vector where each element assigns the multilocus genotype of that individual in the data set.

object

a genclone object

x

a genclone object

fullnames

logical. If TRUE, then the full names of the populations will be printed. If FALSE, then only the first and last three population names are displayed.